Software

 

  • Entropic trust region plane group packing algorithm – Code used in Entropic trust region for densest crystallographic symmetry group packings computations. See README . Matlab source files: packing.zip
  • ASC packing algorithm – Julia implementation of  https://www.nature.com/articles/nature08239 . Source file: jl
  • Transfer entropy significance calculator v2 – optimized version of Transfer entropy significance calculator including pairwise transfer entropy calculation of a network. Source file: py
  • Transfer entropy significance calculator – implements permutation test of transfer entropy. Source file: py
  • ESN Toolbox – implementation of Kraskov-Stoegbauer-Grassberger algorithm for calculating Transfer entropy and Active information storage; Memory capacity of a network and Lyapunov exponent computation; Ragwitz-Kantz embedding criterion; Kozachenko – Leonenko differential entropy estimator in python. Source file: py
  • Two Sample t-test – python script implementing two sample t-test, including p-value,  statistical power and required approximate sample size for type I. error of 0.05 and type II. error of 0.1. Python source file:  py
  • Mersenne twister – 16-bit version of Mersenne twister written in R including Diehard Squeeze test. Project for Stochastic simulation methods courseR source file:  R
  • Exploration of dissociative experiences in psychiatric inpatients with depression using factor analysis and decision trees –  project for Multivariate statistical analysis (2) course . Presentation: pdf (in slovak). R Markdown script: RMD. DataCSV
  • Hidden markov expert (ESN) model – using hidden markov experts for time-series prediction. Project for Machine learning course. Presentation: html (in slovak). R source file: R . Data: ZW
  • Hopfield network –  Hopfield network as auto-associative memory. Project for Neural networks course using only Numpy library. Presentation: pdf (in slovak). Python source files: zip
  • Multilayer perceptron – classification using a multilayer perceptron. Project for Neural networks course using only Numpy library. Presentation: pdf (in slovak). Python source files: zip
  • Self-organizing map – high-dimensional data visualization using self-organazing maps including U-matrix computation.  Project for Neural networks course using only Numpy library. Presentation: pdf (in slovak). Python source files: zip
  • Total least squares – project for  Numerical mathematics (2) course . Matlab source filem
  • Cubic hermite spline – computation of Hermit polynomials and its applicatoin in computing splines. Project for  Numerical mathematics (2) courseMatlab source fileszip
  • Fund – a simple JAVA application including GUI and a database written in MongoDb. Project for Programming, algorithms and complexity (3) course. Source files: zip